distOverlay2: Calculate the distance from each breakpoint to closest motif...
In nriddiford/svBreaks: Analyse structrual variant breakpoint data as produced by [svParser](https://github.com/nriddiford/svParser)
Description
Calculate the distance from each breakpoint to closest motif
Overlay the same number of random simulated breakpoints
Usage
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distOverlay2(
...,
df,
breakpoints,
feature_file,
featureDir = system.file("extdata", "features", package = "svBreaks"),
from = "bps",
chroms = c("2L", "2R", "3L", "3R", "4", "X", "Y"),
lim = 10,
n = 5,
plot = TRUE,
histo = FALSE,
position = "edge",
threshold = 0.05,
write = FALSE,
out_dir
)
nriddiford/svBreaks documentation built on Dec. 29, 2021, 5:10 p.m.
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Description
Calculate the distance from each breakpoint to closest motif Overlay the same number of random simulated breakpoints
Usage
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | distOverlay2(
...,
df,
breakpoints,
feature_file,
featureDir = system.file("extdata", "features", package = "svBreaks"),
from = "bps",
chroms = c("2L", "2R", "3L", "3R", "4", "X", "Y"),
lim = 10,
n = 5,
plot = TRUE,
histo = FALSE,
position = "edge",
threshold = 0.05,
write = FALSE,
out_dir
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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