bpRegionEnrichment: Calculate the enrichment of SVs in genomic regions
In nriddiford/svBreaks: Analyse structrual variant breakpoint data as produced by [svParser](https://github.com/nriddiford/svParser)
View source: R/regionEnrichment.R
Description
Calculate the enrichment of SVs in genomic regions
Usage
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bpRegionEnrichment(
...,
bp_data,
dataType = "svBreaks",
bed_file,
bedDir = "/Users/Nick_curie/Desktop/misc_bed/features",
chroms = c("2L", "2R", "3L", "3R", "4", "X", "Y"),
restrict = TRUE,
slop = 0,
plot = TRUE,
genome_length = 118274340,
intersect = FALSE,
outDir,
parseName = FALSE,
minHits = 10,
multiple = TRUE
)
nriddiford/svBreaks documentation built on Dec. 29, 2021, 5:10 p.m.
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View source: R/regionEnrichment.R
Description
Calculate the enrichment of SVs in genomic regions
Usage
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | bpRegionEnrichment(
...,
bp_data,
dataType = "svBreaks",
bed_file,
bedDir = "/Users/Nick_curie/Desktop/misc_bed/features",
chroms = c("2L", "2R", "3L", "3R", "4", "X", "Y"),
restrict = TRUE,
slop = 0,
plot = TRUE,
genome_length = 118274340,
intersect = FALSE,
outDir,
parseName = FALSE,
minHits = 10,
multiple = TRUE
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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