getData: getData
In nriddiford/svBreaks: Analyse structrual variant breakpoint data as produced by [svParser](https://github.com/nriddiford/svParser)
Description
Usage
Arguments
Value
Description
Function to clean cnv files
Usage
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getData(
...,
infile = system.file("extdata", "all_bps_merged.txt", package = "svBreaks"),
attach_info = system.file("extdata", "samples_names_conversion.txt", package =
"svBreaks"),
gene_lengths_file = system.file("extdata", "gene_lengths.txt", package = "svBreaks"),
expression_data = system.file("extdata", "isc_genes_rnaSeq.txt", package =
"svBreaks"),
expression_source = "flygut"
)
Arguments
infile
File to process [Required]
Value
Dataframe
nriddiford/svBreaks documentation built on Dec. 29, 2021, 5:10 p.m.
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Description Usage Arguments Value
Description
Function to clean cnv files
Usage
1 2 3 4 5 6 7 8 9 10 | getData(
...,
infile = system.file("extdata", "all_bps_merged.txt", package = "svBreaks"),
attach_info = system.file("extdata", "samples_names_conversion.txt", package =
"svBreaks"),
gene_lengths_file = system.file("extdata", "gene_lengths.txt", package = "svBreaks"),
expression_data = system.file("extdata", "isc_genes_rnaSeq.txt", package =
"svBreaks"),
expression_source = "flygut"
)
|
Arguments
infile |
File to process [Required] |
Value
Dataframe
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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