distOverlay: Calculate the distance from each breakpoint to closest motif...
In nriddiford/svBreaks: Analyse structrual variant breakpoint data as produced by [svParser](https://github.com/nriddiford/svParser)
Description
Calculate the distance from each breakpoint to closest motif
Overlay the same number of random simulated breakpoints
Usage
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distOverlay(
...,
breakpoints = NA,
feature_file = system.file("extdata", "tss_locations.txt", package = "svBreaks"),
feature = "tss",
from = "bps",
lim = 10,
byChrom = NA,
n = 5,
plot = TRUE,
keep = NULL,
position = "centre"
)
nriddiford/svBreaks documentation built on Dec. 29, 2021, 5:10 p.m.
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Description
Calculate the distance from each breakpoint to closest motif Overlay the same number of random simulated breakpoints
Usage
1 2 3 4 5 6 7 8 9 10 11 12 13 | distOverlay(
...,
breakpoints = NA,
feature_file = system.file("extdata", "tss_locations.txt", package = "svBreaks"),
feature = "tss",
from = "bps",
lim = 10,
byChrom = NA,
n = 5,
plot = TRUE,
keep = NULL,
position = "centre"
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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