bpAllGenes: Calculate the enrichment of genes affected by SVs (as opposed...
In nriddiford/svBreaks: Analyse structrual variant breakpoint data as produced by [svParser](https://github.com/nriddiford/svParser)
View source: R/geneEnrichment.R
Description
Calculate the enrichment of genes affected by SVs (as opposed to breakpoint hits)
Usage
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bpAllGenes(
...,
gene_lengths_in = system.file("extdata", "gene_lengths.txt", package = "svBreaks"),
affected_genes = system.file("extdata", "all_genes_filtered.txt", package =
"svBreaks"),
n = 3,
genome_length = 118274340,
outfile = NULL
)
nriddiford/svBreaks documentation built on Dec. 29, 2021, 5:10 p.m.
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View source: R/geneEnrichment.R
Description
Calculate the enrichment of genes affected by SVs (as opposed to breakpoint hits)
Usage
1 2 3 4 5 6 7 8 9 | bpAllGenes(
...,
gene_lengths_in = system.file("extdata", "gene_lengths.txt", package = "svBreaks"),
affected_genes = system.file("extdata", "all_genes_filtered.txt", package =
"svBreaks"),
n = 3,
genome_length = 118274340,
outfile = NULL
)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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