Files in nriddiford/svBreaks

Analyse structrual variant breakpoint data as produced by [svParser](https://github.com/nriddiford/svParser)

.gitignore

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

R/bpRegioner.R R/dist2motif.R R/dist2motif2.R R/featureEnrichment.R R/geneEnrichment.R R/getData.R R/mechanims.R R/misc.R R/notch.R R/rainfall.R R/regionEnrichment.R R/sizeDist.R R/summary.R R/utils.R README.md

_pkgdown.yml

docs/authors.html

docs/docsearch.css

docs/index.html

docs/jquery.sticky-kit.min.js

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Volcano.html

docs/reference/bootStrap.html

docs/reference/bpAllGenes.html

docs/reference/bpChromDist.html

docs/reference/bpFeatureEnrichment.html

docs/reference/bpFeatureEnrichmentPlot.html

docs/reference/bpFeatures.html

docs/reference/bpGenAll.html

docs/reference/bpGeneEnrichment.html

docs/reference/bpGeneEnrichmentPlot.html

docs/reference/bpRainfall.html

docs/reference/bpRegionEnrichment.html

docs/reference/bpRegionEnrichmentPlot.html

docs/reference/bpSim.html

docs/reference/bpStats.html

docs/reference/cleanTheme.html

docs/reference/delsRegionEnrichment.html

docs/reference/dist2Motif.html

docs/reference/distOverlay.html

docs/reference/featureDensity.html

docs/reference/generateData.html

docs/reference/genomeHits.html

docs/reference/genotypeTypeCount.html

docs/reference/getData.html

docs/reference/ggVolcano.html

docs/reference/hello.html

docs/reference/index.html

docs/reference/mergeOverlaps.html

docs/reference/notchDels.html

docs/reference/notchFilt.html

docs/reference/notchHits.html

docs/reference/plotMonteCarlo.html

docs/reference/plotdistanceOverlay.html

docs/reference/setCols.html

docs/reference/simSig.html

docs/reference/sizeDist.html

docs/reference/slideTheme.html

docs/reference/subtractUnmappable.html

docs/reference/svTypes.html

docs/reference/svsbySample.html

docs/reference/typeLen.html

docs/reference/typeLenCount.html

docs/reference/writeBed.html

inst/extdata/Buchon_summary_ISCs.txt

inst/extdata/gene_lengths.txt

inst/extdata/intervals.bed

man/Volcano.Rd man/bpAllGenes.Rd man/bpFeatureEnrichment.Rd man/bpFeatureEnrichmentPlot.Rd man/bpFeatures.Rd man/bpGeneEnrichment.Rd man/bpGeneEnrichmentPlot.Rd man/bpRainfall.Rd man/bpRegionEnrichment.Rd man/bpRegionEnrichmentPlot.Rd man/bpRegioneR.Rd man/bpSim.Rd man/bpStats.Rd man/cleanTheme.Rd man/dist2Motif.Rd man/dist2motif2.Rd man/distOverlay.Rd man/distOverlay2.Rd man/featureDensity.Rd man/geneHit.Rd man/generateData.Rd man/generateData2.Rd man/genesbySample.Rd man/genomeHits.Rd man/genotypeTypeCount.Rd man/getData.Rd man/getMissingSamples.Rd man/ggVolcano.Rd man/hello.Rd man/mechansimSize.Rd man/mergeOverlaps.Rd man/micromologyPlot.Rd man/notchFilt.Rd man/notchHits.Rd man/plotMonteCarlo.Rd man/plot_bpRegioner.Rd man/plotdistanceOverlay.Rd man/plotdistanceOverlay2.Rd man/setCols.Rd man/showSamples.Rd man/simSig.Rd man/simSig2.Rd man/sizeDist.Rd man/slideTheme.Rd man/snv_colours.Rd man/subtractUnmappable.Rd man/svTypes.Rd man/sv_colours.Rd man/svsbySample.Rd man/swapSampleNames.Rd man/tally_hits.Rd man/transform_types.Rd man/writeBed.Rd

regions.bed

svBreaks.Rproj

nriddiford/svBreaks documentation built on Dec. 29, 2021, 5:10 p.m.