Files in oacar/synal
Synteny Alignment and Analysis for Saccharomyces sensu stricto
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/.DS_Store
R/RcppExports.R
R/aaTranslation.R
R/align.R
R/alignAnalyze.R
R/alignWoSmorf.R
R/analyze.R
R/analyzePairwise.R
R/calcIdentity.R
R/checkAlignment.R
R/checkCodon.R
R/checkORF.R
R/countFrameShifting.R
R/findBestOverlap.R
R/findHomolog.R
R/findI.R
R/findM.R
R/findOverlappingOrfs.R
R/findX.R
R/findYgeneSeq.R
R/macseAdjustment.R
R/readFiles.R
R/regSeq.R
R/scerAnnotatedSequences.R
R/speciesVector.R
R/startCodon.R
R/stopCodon.R
R/subalignment.R
R/synal-package.R
R/turnWoGaps.R
README.md
data/scerAnnotatedSequences.RData
inst/examples/exampleAlignment.fa
inst/examples/exampleAlignment_2.fa
inst/executable/runSynal.R
man/aaTranslation.Rd
man/align.Rd
man/alignAnalyze.Rd
man/alignWoSmorf.Rd
man/analyze.Rd
man/analyzePairwise.Rd
man/calcIdentity.Rd
man/calc_identity.Rd
man/checkAlignment.Rd
man/checkCodon.Rd
man/checkFrame.Rd
man/checkORF.Rd
man/countFrameShifting.Rd
man/findBestOverlap.Rd
man/findHomolog.Rd
man/findI.Rd
man/findM.Rd
man/findOverlappingOrfs.Rd
man/findX.Rd
man/findYGeneSeq.Rd
man/macseAdjustment.Rd
man/map_alignment_sequence.Rd
man/readFiles.Rd
man/regSeq.Rd
man/scerAnnotatedSequences.Rd
man/speciesVector.Rd
man/startCodon.Rd
man/stopCodon.Rd
man/subalignment.Rd
man/synal_cpp-package.Rd
man/turnWoGaps.Rd
src/.gitignore
src/RcppExports.cpp
src/calc_identity.cpp
src/map_alignment_sequence.cpp
synal.Rproj
tests/testthat.R
tests/testthat/test-align.R
tests/testthat/test-findHomolog.R
vignettes/.gitignore
vignettes/vignette.Rmd
