VisualizeStackCentroids: Visualize Cells in an Image Stack

In ocbe-uio/CellMigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Description

Visualize objects that were identified as cells in a given image stack

Usage

VisualizeStackCentroids(
  tc_obj,
  stack = 1,
  pnt.cex = 1.2,
  txt.cex = 0.9,
  offset = 0.18,
  main = NULL
)

Arguments

tc_obj	a trackedCells object
stack	index of the image stack to use
pnt.cex	cex of the points drawn around cells
txt.cex	cex of the text used to annotate cells
offset	offset value for the annotation
main	string used for the plot title, can be NULL= NULL

Value

None

Author(s)

Damiano Fantini, [e-mail]

References

https://www.data-pulse.com/dev_site/cellmigration/ https://www.mathworks.com/matlabcentral/fileexchange/60349-fasttracks

Examples

# Representative output
x <- get(data(TrackCellsDataset))
VisualizeStackCentroids(tc_obj = x, stack = 2, pnt.cex = 5, offset = 1.3)

ocbe-uio/CellMigRation documentation built on Dec. 26, 2021, 10:19 p.m.