VisualizeStackCentroids: Visualize Cells in an Image Stack

Description Usage Arguments Value Author(s) References Examples

View source: R/all_functions_v8.R

Description

Visualize objects that were identified as cells in a given image stack

Usage

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VisualizeStackCentroids(
  tc_obj,
  stack = 1,
  pnt.cex = 1.2,
  txt.cex = 0.9,
  offset = 0.18,
  main = NULL
)

Arguments

tc_obj

a trackedCells object

stack

index of the image stack to use

pnt.cex

cex of the points drawn around cells

txt.cex

cex of the text used to annotate cells

offset

offset value for the annotation

main

string used for the plot title, can be NULL= NULL

Value

None

Author(s)

Damiano Fantini, damiano.fantini@gmail.com

References

https://www.data-pulse.com/dev_site/cellmigration/ https://www.mathworks.com/matlabcentral/fileexchange/60349-fasttracks

Examples

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# Representative output
x <- get(data(TrackCellsDataset))
VisualizeStackCentroids(tc_obj = x, stack = 2, pnt.cex = 5, offset = 1.3)

ocbe-uio/CellMigRation documentation built on Dec. 26, 2021, 10:19 p.m.