getMSDtable: Getting the Mean Square Displacement

Description Usage Arguments Value Author(s) References Examples

View source: R/all_functions_v8.R

Description

The MSD function automatically computes the mean square displacements across several sequential time intervals. MSD parameters are used to assess the area explored by cells over time.

Usage

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getMSDtable(object)

Arguments

object

CellMig class object, which is a list of data frames resulted from the PreProcessing.

Value

A data frame of MSD values.

Author(s)

Salim Ghannoum salim.ghannoum@medisin.uio.no

References

https://www.data-pulse.com/dev_site/cellmigration/

Examples

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data(TrajectoryDataset)
rmDF <- TrajectoryDataset[seq(1,600,by=1), ]
rmTD <- CellMig(rmDF)
rmTD <- rmPreProcessing(rmTD,FrameN=100)
rmTD <- MSD(rmTD, sLAG=0.25, ffLAG=0.25, export=FALSE)
head(getMSDtable(rmTD))

ocbe-uio/CellMigRation documentation built on Dec. 26, 2021, 10:19 p.m.