visualizeTrcks: Visualize Cell Tracks

In ocbe-uio/CellMigRation: Track Cells, Analyze Cell Trajectories and Compute Migration Statistics

Description

Annotates an image with cell centroids by adding cell ROIs and drawing cell tracks

Usage

visualizeTrcks(
  tracks,
  width_px,
  height_px,
  i.slice = 1,
  pnt.cex = 1.2,
  lwd = 1.2,
  col = "red"
)

Arguments

tracks	cell tracks
width_px	width in pixels
height_px	height in pixels
i.slice	index of the stack slice to use
pnt.cex	cex for the points (circles) drawn around the cells
lwd	lwd of cell tracks
col	color used for the cell tracks, .g. "red"

Value

None

Author(s)

Damiano Fantini, [e-mail]

References

https://www.data-pulse.com/dev_site/cellmigration/ https://www.mathworks.com/matlabcentral/fileexchange/60349-fasttracks

Examples

x1 <- data.frame(c(10, 30, 25, 55, 43, 39, 75, 72),
                 c(22, 28, 35, 24, 31, 39, 65, 73),
                 c( 1,  2,  3,  4,  5,  6,  7,  8),
                 c( 1,  1,  1,  1,  1,  1,  1,  1))
plot(2, 2, xlim = c(0,1), ylim = c(0,1), xlab = "", ylab = "", las = 2)
cellmigRation:::visualizeTrcks(x1, width_px = 100, height_px = 100)

ocbe-uio/CellMigRation documentation built on Dec. 26, 2021, 10:19 p.m.