phsc.bam.get.length.and.pos.of.mergedreads: Calculate position and length of merged reads
In olli0601/phyloscan:
View source: R/phyloscan.fun.R
phsc.bam.get.length.and.pos.of.mergedreads R Documentation
Calculate position and length of merged reads
Description
This function calculates the position and length of the two sequenced segments from a single RNA template, potentially after merging when both segments overlap.
Usage
phsc.bam.get.length.and.pos.of.mergedreads(bam.file.name, error.strict = TRUE)
Arguments
bam.file.name
full path name to bam file.
Value
data.table with columns QNAME (template query ID), POS (leftmost position of read), LEN (length of read)
olli0601/phyloscan documentation built on April 19, 2024, 8:31 p.m.
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View source: R/phyloscan.fun.R
| phsc.bam.get.length.and.pos.of.mergedreads | R Documentation |
Calculate position and length of merged reads
Description
This function calculates the position and length of the two sequenced segments from a single RNA template, potentially after merging when both segments overlap.
Usage
phsc.bam.get.length.and.pos.of.mergedreads(bam.file.name, error.strict = TRUE)
Arguments
bam.file.name |
full path name to bam file. |
Value
data.table with columns QNAME (template query ID), POS (leftmost position of read), LEN (length of read)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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