View source: R/phyloscan.fun.private.R
phsc.cmd.process.phyloscanner.output.in.directory | R Documentation |
This function generates bash commands that combine the various Rscripts in the phyloscanner toolkit
phsc.cmd.process.phyloscanner.output.in.directory(
tmp.dir,
file.patients,
pty.args
)
tmp.dir |
Directory with phyloscanner output. |
file.patients |
File name of the file that contains the list of unique individuals/units that the bam files correspond to, possibly after re-naming. |
pty.args |
List of phyloscanner input variables. |
character string of bash commands.
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