phsc.cmd.bam.calculate.read.distribution: Generate bash commands to calculate read distribution in bam...

In olli0601/phyloscan:

Generate bash commands to calculate read distribution in bam file

Description

This function generates bash commands to calculate read distribution in bam file

Usage

phsc.cmd.bam.calculate.read.distribution(pty.runs, pty.args)

Arguments

pty.runs	data.table with columns SAMPLE_ID and PTY_RUN
pty.args	List of input variables containing the fields "prog.bam.distr.calculator", "data.dir", "out.dir", "work.dir"

Value

character string of bash commands.

olli0601/phyloscan documentation built on May 5, 2024, 5:25 a.m.