View source: R/phyloscan.fun.private.R
phsc.get.assignments.by.window.for.couple | R Documentation |
This function extracts all transmission assignments per window for two individuals.
phsc.get.assignments.by.window.for.couple(id1, id2, infiles)
id1 |
Identifier of the first individual. This is the entry for that individual in the phyloscanner .bam file. |
id2 |
Identifier of the second individual. |
infiles |
One or more file names of transmission stats rda files. These end typically with '_trmStatsPerWindow.rda'. |
data.table with columns ID1 ID2 W_FROM (window start) W_TO (window end), and further columns for each infile that give the transmission assignments per window.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.