View source: R/phyloscan.fun.private.R
phsc.get.most.likely.transmission.chains | R Documentation |
This function reconstructs most likely transmission chains from the scores associated with directed and undirected edges.
phsc.get.most.likely.transmission.chains(rtnn, verbose = 0, method = "Edmonds")
rtn |
data.table with network scores for all individuals that could form a network. Must contain columns 'ID1','ID2','IDCLU','GROUP','TYPE','POSTERIOR_SCORE','KEFF'. |
new data.table with added columns LINK_12 LINK_21 (either 1 or 0), and MX_PROB_12 MX_PROB_21 (associated posterior probabilities)
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