phsc.define.stage1.analyses: Determine stage 1 phyloscanner runs
In olli0601/phyloscan:
View source: R/phyloscan.fun.R
phsc.define.stage1.analyses R Documentation
Determine stage 1 phyloscanner runs
Description
This function groups individuals for phyloscanner analyses, so that phylogenetic linkage between every pair of individuals is assessed at least once.
Specifically, individuals are grouped into batches of specified size, and then, all possible pairs of batches are formed.
Each of these pairs of batches defines a group of individuals between whom phylogenetic linkages are assessed in one phyloscanner run.
The number of individuals in each group is twice the batch size.
Usage
phsc.define.stage1.analyses(x, batch.size = 50)
Arguments
x
Character vector of individual identifiers.
batch.size
Batch size. Default is 50.
Value
data.table with rows 'IND' (individual identifiers), 'PTY_RUN' group for phyloscanner analysis, and 'BATCH' batch of individuals (not used further, but there should be two batches of individuals in each phyloscanner analysis).
olli0601/phyloscan documentation built on April 19, 2024, 8:31 p.m.
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View source: R/phyloscan.fun.R
| phsc.define.stage1.analyses | R Documentation |
Determine stage 1 phyloscanner runs
Description
This function groups individuals for phyloscanner analyses, so that phylogenetic linkage between every pair of individuals is assessed at least once. Specifically, individuals are grouped into batches of specified size, and then, all possible pairs of batches are formed. Each of these pairs of batches defines a group of individuals between whom phylogenetic linkages are assessed in one phyloscanner run. The number of individuals in each group is twice the batch size.
Usage
phsc.define.stage1.analyses(x, batch.size = 50)
Arguments
x |
Character vector of individual identifiers. |
batch.size |
Batch size. Default is 50. |
Value
data.table with rows 'IND' (individual identifiers), 'PTY_RUN' group for phyloscanner analysis, and 'BATCH' batch of individuals (not used further, but there should be two batches of individuals in each phyloscanner analysis).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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