API for ollyburren/cupcake
PCA for GWAS

Global functions
LD	Man page
SNP.manifest	Man page
add_ref_annotations	Man page Source code
align_alleles	Man page Source code
ambiguous	Man page Source code
basis.trait.proj	Man page
beta.centers	Man page
comp	Man page Source code
compute_seb_proj_var	Man page Source code
compute_seb_proj_var_sparse	Man page Source code
compute_shrinkage_metrics	Man page Source code
control_prior_shape	Man page Source code
cov_beta	Man page Source code
create_basis	Man page Source code
create_ds_matrix	Man page Source code
e_lor	Man page Source code
est_a1b1	Man page Source code
flip_allele	Man page Source code
fopt	Man page Source code
get_gwas_data	Man page Source code
get_seb	Man page Source code
logsum	Man page Source code
lor_constraint	Man page Source code
lor_f	Man page Source code
lor_nf	Source code
lyons_egpa	Man page
maf_se_estimate	Man page Source code
maf_se_estimate_sample_size	Man page Source code
mvs_perm	Man page Source code
mvs_sigma	Man page Source code
opt_a1b1	Man page Source code
p2z	Man page Source code
post_lor	Man page Source code
project_basis	Man page Source code
project_sparse	Man page Source code
rot.pca	Man page
se_null	Man page Source code
shrinkage	Man page
simulate_beta	Man page Source code
simulate_study	Man page Source code
use.pca	Man page
vcf2snpmatrix	Man page Source code
wakefield_null_pp	Man page Source code
wakefield_pp	Man page Source code
ws_shrinkage	Man page Source code
z2p	Man page Source code