create_basis: This function creates a basis 'create_basis' creates a trait...
In ollyburren/cupcake: PCA for GWAS
Description
Usage
Arguments
Value
Description
This function creates a basis
create_basis creates a trait snp matrix that is suitable for basis creation and projection
Usage
1
create_basis(gwas.DT, shrink.DT, apply.shrinkage = TRUE)
Arguments
gwas.DT
data.table object for basis traits as returned by get_gwas_data
shrink.DT
data.table object of matching shrinkage estimates returned by compute_shrinkage_metrics
apply.shrinkage
boolean on whether to apply shrinkage or not [Default TRUE]
Value
a prcomp object representing the basis
ollyburren/cupcake documentation built on July 30, 2020, 9:58 a.m.
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Description Usage Arguments Value
Description
This function creates a basis
create_basis creates a trait snp matrix that is suitable for basis creation and projection
Usage
1 | create_basis(gwas.DT, shrink.DT, apply.shrinkage = TRUE)
|
Arguments
gwas.DT |
data.table object for basis traits as returned by |
shrink.DT |
data.table object of matching shrinkage estimates returned by |
apply.shrinkage |
boolean on whether to apply shrinkage or not [Default TRUE] |
Value
a prcomp object representing the basis
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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