simulate_study: simulate betas for a study 'simulate_study' use the...
In ollyburren/cupcake: PCA for GWAS
Description
Usage
Arguments
Value
Description
simulate betas for a study
simulate_study use the multivariate normal to simulate realistic betas for a study
Usage
1
simulate_study(DT, ref_gt_dir, shrink_beta = TRUE, n_sims = 10, quiet = TRUE)
Arguments
DT
a data.table - as returned by get_gwas_data
ref_gt_dir
scalar - path to a dir of R objects named CHR_1kg.RData containing reference GT in snpMatrix format
shrink_beta
scalar - Whether to use Bayesian shrinkage of betas (default = TRUE)
n_sims
a scalar - number of simulations (default 10)
quiet
a scalar - boolean whether to show progress messages
Value
a DT of n_sims simulated studies for projection
ollyburren/cupcake documentation built on July 30, 2020, 9:58 a.m.
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Description Usage Arguments Value
Description
simulate betas for a study
simulate_study use the multivariate normal to simulate realistic betas for a study
Usage
1 | simulate_study(DT, ref_gt_dir, shrink_beta = TRUE, n_sims = 10, quiet = TRUE)
|
Arguments
DT |
a data.table - as returned by |
ref_gt_dir |
scalar - path to a dir of R objects named CHR_1kg.RData containing reference GT in snpMatrix format |
shrink_beta |
scalar - Whether to use Bayesian shrinkage of betas (default = TRUE) |
n_sims |
a scalar - number of simulations (default 10) |
quiet |
a scalar - boolean whether to show progress messages |
Value
a DT of n_sims simulated studies for projection
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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