create_ds_matrix: This function creates a trait snp matrix 'create_ts_matrix'...
In ollyburren/cupcake: PCA for GWAS
Description
Usage
Arguments
Value
Description
This function creates a trait snp matrix
create_ts_matrix creates a trait snp matrix that is suitable for basis creation and projection
Usage
1
create_ds_matrix(bDT, sDT, method)
Arguments
bDT
data.table object for basis traits as returned by get_gwas_data
sDT
data.table object of matching shrinkage estimates returned by compute_shrinkage_metrics
method
scalar vector (either emp or est), emp uses empirically generated MAF SE, est uses and estimate.
Value
a matrix.
ollyburren/cupcake documentation built on July 30, 2020, 9:58 a.m.
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Description Usage Arguments Value
Description
This function creates a trait snp matrix
create_ts_matrix creates a trait snp matrix that is suitable for basis creation and projection
Usage
1 | create_ds_matrix(bDT, sDT, method)
|
Arguments
bDT |
data.table object for basis traits as returned by |
sDT |
data.table object of matching shrinkage estimates returned by |
method |
scalar vector (either emp or est), emp uses empirically generated MAF SE, est uses and estimate. |
Value
a matrix.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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