gen2dose: Convert IMPUTE2 gen to dose
In oncogenetics/oncofunco: Custom function for Oncogenetics team
gen2dose R Documentation
Convert IMPUTE2 gen to dose
Description
This function converts IMPUTE2 gen file posterior probabilities to dosage: collapse every 3 genetype columns for each sample into one columns as: 0*AA + 1*AB + 2*BB
Usage
gen2dose(genFile, sampleFile, chrName)
Arguments
genFile
input gen file
sampleFile
if provided sampleID will be added as header, else X1..Xn as sampleID
chrName
chromosome name c(1:22,X,Y)
Value
a data.frame object
Author(s)
Tokhir Dadaev
oncogenetics/oncofunco documentation built on March 9, 2024, 5:23 p.m.
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| gen2dose | R Documentation |
Convert IMPUTE2 gen to dose
Description
This function converts IMPUTE2 gen file posterior probabilities to dosage: collapse every 3 genetype columns for each sample into one columns as: 0*AA + 1*AB + 2*BB
Usage
gen2dose(genFile, sampleFile, chrName)
Arguments
genFile |
input gen file |
sampleFile |
if provided sampleID will be added as header, else X1..Xn as sampleID |
chrName |
chromosome name |
Value
a data.frame object
Author(s)
Tokhir Dadaev
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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