plotEQTL: LocusExplorer - TCGA eQTL plot

In oncogenetics/oncofunco: Custom function for Oncogenetics team

LocusExplorer - TCGA eQTL plot

Description

TCGA eQTL plot for LocusExplorer.

Usage

plotEQTL(
  data = NULL,
  xStart = NULL,
  xEnd = NULL,
  hits = NULL,
  hitsTags = TRUE,
  label = "eQTL TCGA",
  pad = TRUE,
  title = NULL
)

Arguments

data	data.frame with columns: c("SNP", "gene", "xSNP", "xGene")
xStart, xEnd	Region range, minimum and maximum position on x axis, advised to keep this less than 5Mb.
hits	SNP names to label in the plot. Must be present in data data.frame.
hitsTags	Tag SNP names to label in the plot. Must be present in data data.frame.
pad	Default is TRUE, to align plots pad strings with spaces, using oncofunco::strPadLeft().
title	character string for plot title. Default is NULL, i.e.: no plot title.

Value

a ggplot object

Author(s)

Tokhir Dadaev

oncogenetics/oncofunco documentation built on March 9, 2024, 5:23 p.m.