plotLD: LocusExplorer - LD plot

In oncogenetics/oncofunco: Custom function for Oncogenetics team

LocusExplorer - LD plot

Description

LD plot for LocusExplorer.

Usage

plotLD(
  data = NULL,
  xStart = NULL,
  xEnd = NULL,
  hits = NULL,
  hitsName = hits,
  hitsColour = NULL,
  hitsLabel = TRUE,
  pad = TRUE,
  title = NULL
)

Arguments

data	plink LD output format, data.frame object with c("BP_A","SNP_A","BP_B","SNP_B","R2") columns.
xStart, xEnd	Region range, zoom, minimum BP and maximum BP, advised to keep this less than 5Mb.
hits	SNP names to label in the plot.
hitsName	alternative SNP names to label in the plot. Default same as 'hits'
hitsColour	Default NULL, uses ggplot colours.
pad	Default is TRUE, to align plots pad strings with spaces, using oncofunco::strPadLeft().
title	character string for plot title. Default is NULL, i.e.: no plot title.

Value

a ggplot object

Author(s)

Tokhir Dadaev

oncogenetics/oncofunco documentation built on March 9, 2024, 5:23 p.m.