geneSymbol: Get genes as GRanges object

In oncogenetics/oncofunco: Custom function for Oncogenetics team

Get genes as GRanges object

Description

This function returns GRanges object, used as input for plotting gene track Warning: too much dependency to other packages, will need to rewrite/update the code in future far far away... Warning: only works for LE at the moment with pre-loaded bio packages

Usage

geneSymbol(chrom = NA, chromStart = NA, chromEnd = NA)

Arguments

chrom	chromosome name, must be character class with length(chrom)==1, e.g.: chr1"
chromStart, chromEnd	Region range, zoom, minimum BP and maximum BP, advised to keep this less than 5Mb.

Value

a GRanges object

Author(s)

Tokhir Dadaev

oncogenetics/oncofunco documentation built on March 9, 2024, 5:23 p.m.