plotAnnot: LocusExplorer - Annotation plot, collapsed

In oncogenetics/oncofunco: Custom function for Oncogenetics team

LocusExplorer - Annotation plot, collapsed

Description

Annotation plot for LocusExplorer.

Usage

plotAnnot(
  data,
  chrom = NULL,
  xStart = NULL,
  xEnd = NULL,
  vline = NULL,
  collapse = FALSE,
  pad = TRUE
)

Arguments

data	dataframe with c(CHR, BP, TYPE1, TYPE2, COLOUR_HEX, TYPE2N) columns.
chrom	chromosome name, interger 1:23
xStart, xEnd	Region range, zoom, minimum BP and maximum BP, advised to keep this less than 5Mb.
vline	Mark hits on genes
collapse	Collapse TYPE2 group into TYPE1 group
pad	Default is TRUE, to align plots pad strings with spaces, using oncofunco::strPadLeft().

Value

a ggplot object

Author(s)

Tokhir Dadaev

oncogenetics/oncofunco documentation built on March 9, 2024, 5:23 p.m.