uniqueBimVariant: Fix Plink BIM file variant IDs when missing or duplicated
In oncogenetics/oncofunco: Custom function for Oncogenetics team
View source: R/uniqueBimVariant.R
uniqueBimVariant R Documentation
Fix Plink BIM file variant IDs when missing or duplicated
Description
This function calculates MAF for imputed SNP data in dosage format.
Related Biostars post: https://www.biostars.org/p/315219/
BIM file description: https://www.cog-genomics.org/plink2/formats#bim
Usage
uniqueBimVariant(fileIn = NULL, fileOut = NULL, sep = "_")
Arguments
fileIn
Plink BIM filename
fileOut
Output filename Plink BIM format
sep
Separator to use when variant ID is missing, default "_".
Value
none, outputs BIM file
Author(s)
Tokhir Dadaev
oncogenetics/oncofunco documentation built on March 9, 2024, 5:23 p.m.
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View source: R/uniqueBimVariant.R
| uniqueBimVariant | R Documentation |
Fix Plink BIM file variant IDs when missing or duplicated
Description
This function calculates MAF for imputed SNP data in dosage format. Related Biostars post: https://www.biostars.org/p/315219/ BIM file description: https://www.cog-genomics.org/plink2/formats#bim
Usage
uniqueBimVariant(fileIn = NULL, fileOut = NULL, sep = "_")
Arguments
fileIn |
Plink BIM filename |
fileOut |
Output filename Plink BIM format |
sep |
Separator to use when variant ID is missing, default "_". |
Value
none, outputs BIM file
Author(s)
Tokhir Dadaev
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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