deconvolve: deconvolve

In oyvble/euroformix: A Quantitative Model for Interpreting DNA Mixtures

deconvolve

Description

deconvolve ranks the set of the most conditional posterior probability of genotypes the STR DNA mixture given a fitted model under a hypothesis.

Usage

deconvolve(
  mlefit,
  alpha = 0.99,
  maxlist = 1000,
  signif = 4,
  checkCalcs = FALSE
)

Arguments

mlefit	Fitted object using calcMLE/contLikMLE function.
alpha	Required sum of the listed posterior probabilities
maxlist	NOT IN USE
signif	Number of significant numbers
checkCalcs	NOT IN USE

Details

The procedure calculates the likelihood for each single locus. Then it combines the most probable genotypes from each loci to produce a ranked list of deconvolved profiles.

Value

ret A list(table1,table2,table3,table4,rankGi,rankG,pG) where rankG is the ranked genotypes with corresponding probabilities in pG. rankgGi is the same, but per marker. table1 is now empty (since joint results is not obtained). table2 uses rankGi to find marginal results for top-genotypes. table3 and table4 shows this marginalized on genotypes and alleles per contributor

Author(s)

Oyvind Bleka

oyvble/euroformix documentation built on April 13, 2025, 3:18 a.m.