plotTopEPG2: plotTopEPG2

In oyvble/euroformix: A Quantitative Model for Interpreting DNA Mixtures

plotTopEPG2

Description

EPG data visualizer (interactive)

Usage

plotTopEPG2(
  MLEobj,
  DCobj = NULL,
  kit = NULL,
  dyeYmax = TRUE,
  plotRepsOnly = TRUE,
  options = NULL,
  withStutterModel = TRUE
)

Arguments

MLEobj	An object returned from contLikMLE
DCobj	An object returned from devonvolve: Must be run with same object as MLEobj
kit	Short name of kit: See supported kits with getKit(). Argument ignored if degradation model used.
dyeYmax	Whether the Y-axis scale should be dye specific
plotRepsOnly	Whether only replicates are plotted
options	Layout options can be provided: w0 (layout width),marg0 (margin), txtsize0 (text size), locsize0 (locus name size), minY (minimum Y-axis height), ymaxscale (Scaling maximum Y-axis height), transdeg (transparanct of bars 0=max, 1=min)
withStutterModel	Whether taking the stutter model into account when visualizing

Details

Plots the expected peak heights of the top genotypes. The peak heights for corresponding alleles (one sample) are superimposed.

Value

A plotly widget

Author(s)

Oyvind Bleka

oyvble/euroformix documentation built on Aug. 25, 2023, 11:14 a.m.