plotSumPH: plotSumPH

In oyvble/euroformix: A Quantitative Model for Interpreting DNA Mixtures

plotSumPH

Description

Plotting sumPH per marker

Usage

plotSumPH(
  samples,
  kit = NULL,
  ignoreMarkers = c("Y", "AM"),
  LUSsymbol = "_",
  MPSsymbol = ":"
)

Arguments

samples	A List [[sample]][[locus]] with samples which for each samples has locus-list elements with list elements adata and hdata. 'adata' is a qualitative (allele) data vector and 'hdata' is a quantitative (peak heights) data vector.
kit	shortname of kit: Obtained from getKit()
ignoreMarkers	Give string subset of markers that should be ignored in visualization
LUSsymbol	Used to recognize CE in LUS alleles
MPSsymbol	Used to recognize CE in MPS alleles

Details

The function is fitting gamma distribution to the sumPH per marker to investigate fit: Degradation or sample differences

Author(s)

Oyvind Bleka

oyvble/euroformix documentation built on Aug. 25, 2023, 11:14 a.m.