plotTopMPS2: plotTopMPS2

In oyvble/euroformix: A Quantitative Model for Interpreting DNA Mixtures

plotTopMPS2

Description

MPS data visualizer (interactive)

Usage

plotTopMPS2(
  MLEobj,
  DCobj = NULL,
  grpsymbol = "_",
  locYmax = TRUE,
  options = NULL,
  withStutterModel = TRUE
)

Arguments

MLEobj	An object returned from contLikMLE
DCobj	An object returned from devonvolve: Must be run with same object as MLEobj
grpsymbol	A separator for each allele giving plot grouping. Useful for separating conventional repeat units (RU) and sequence variant.
locYmax	Whether Y-axis should be same for all markers (FALSE) or not (TRUE this is default)
options	A list of possible plot configurations. See comments below
withStutterModel	Whether taking the stutter model into account when visualizing

Details

Plots the expected peak heights of the top genotypes. The peak heights for corresponding alleles (one sample) are superimposed.

Value

A plotly widget

Author(s)

Oyvind Bleka

oyvble/euroformix documentation built on Aug. 25, 2023, 11:14 a.m.