extract_motifs: Extracts motifs from a set of reads

Description Usage Arguments

View source: R/extract_motifs.R

Description

Extracts motifs from a set of reads

Usage

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extract_motifs(seq_data, prefix, suffix, motif_length, max.mismatch = 5,
  fixed = FALSE)

Arguments

seq_data

The sequences whose motifs must be extracted

prefix

The prefix that is used to identify the motif

suffix

The suffix that is used to identify the motif

motif_length

The length of the motif that forms the pid.

max.mismatch

See ?vmatchPattern

fixed

See ?vmatchPattern


philliplab/MotifBinner documentation built on Sept. 2, 2020, 11:41 a.m.