extract_motifs: Extracts motifs from a set of reads

In philliplab/MotifBinner: Bin reads by Motif

Description

Extracts motifs from a set of reads

Usage

extract_motifs(seq_data, prefix, suffix, motif_length, max.mismatch = 5,
  fixed = FALSE)

Arguments

seq_data	The sequences whose motifs must be extracted
prefix	The prefix that is used to identify the motif
suffix	The suffix that is used to identify the motif
motif_length	The length of the motif that forms the pid.
max.mismatch	See ?vmatchPattern
fixed	See ?vmatchPattern

philliplab/MotifBinner documentation built on Sept. 2, 2020, 11:41 a.m.