View source: R/extract_motifs.R
Extracts motifs from a set of reads
1 2 | extract_motifs(seq_data, prefix, suffix, motif_length, max.mismatch = 5,
fixed = FALSE)
|
seq_data |
The sequences whose motifs must be extracted |
prefix |
The prefix that is used to identify the motif |
suffix |
The suffix that is used to identify the motif |
motif_length |
The length of the motif that forms the pid. |
max.mismatch |
See ?vmatchPattern |
fixed |
See ?vmatchPattern |
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