View source: R/extract_motifs.R
A wrapper for extract motifs that will execute it in a parallel nature using the specified number of cpus
1 2 | extract_motifs_par(seq_data, prefix, suffix, motif_length, max.mismatch = 5,
fixed = FALSE, ncpu = 6, job_size = NULL, verbose = FALSE)
|
seq_data |
The sequences whose motifs must be extracted |
prefix |
The prefix that is used to identify the motif |
suffix |
The suffix that is used to identify the motif |
motif_length |
The length of the motif that forms the pid. |
max.mismatch |
See ?vmatchPattern |
fixed |
See ?vmatchPattern |
ncpu |
The number of cores to use |
job_size |
The number of sequences to group into a single job |
verbose |
If set to true a progress report will be given via file creation in the sessions temp dir |
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