extract_motifs_par: A wrapper for extract motifs that will execute it in a...

Description Usage Arguments

View source: R/extract_motifs.R

Description

A wrapper for extract motifs that will execute it in a parallel nature using the specified number of cpus

Usage

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extract_motifs_par(seq_data, prefix, suffix, motif_length, max.mismatch = 5,
  fixed = FALSE, ncpu = 6, job_size = NULL, verbose = FALSE)

Arguments

seq_data

The sequences whose motifs must be extracted

prefix

The prefix that is used to identify the motif

suffix

The suffix that is used to identify the motif

motif_length

The length of the motif that forms the pid.

max.mismatch

See ?vmatchPattern

fixed

See ?vmatchPattern

ncpu

The number of cores to use

job_size

The number of sequences to group into a single job

verbose

If set to true a progress report will be given via file creation in the sessions temp dir


philliplab/MotifBinner documentation built on Sept. 2, 2020, 11:41 a.m.