extract_motifs_iterative: A wrapper for extract motifs parallel that will iteratively...
In philliplab/MotifBinner: Bin reads by Motif

A wrapper for extract motifs parallel that will iteratively allow for more mismatches in the prefix and suffix surrounding the pids.

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extract_motifs_iterative(seq_data, prefix, suffix, motif_length,
  max.mismatch = 5, fixed = FALSE, ncpu = 6, job_size = NULL,
  max.suffix.chop = NULL, max.mismatch_start = 0, verbose = FALSE)

`seq_data`	The sequences whose motifs must be extracted
`prefix`	The prefix that is used to identify the motif
`suffix`	The suffix that is used to identify the motif
`motif_length`	The length of the motif that forms the pid.
`max.mismatch`	See ?vmatchPattern
`fixed`	See ?vmatchPattern
`ncpu`	The number of cores to use
`job_size`	The number of sequences to group into a single job
`max.suffix.chop`	The maximum amount whereby to shorten the suffix defaults to 0.5*length(suffix)
`max.mismatch_start`	What is the minimum number of mismatches to search for?
`verbose`	If set to true a progress will be printed after each loop iteration. Also passed through to the extract_motifs_par function.