score_consensus: Given a test bin of sequences, benchmark how well the input...

Description Usage Arguments

View source: R/consensus_checker.R

Description

Given a test bin of sequences, benchmark how well the input consensus sequence can be reconstructed

Usage

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score_consensus(test_bin, classification_technique = "infovar_balance",
  classification_params = list(threshold = 1),
  alignment_technique = "muscle", alignment_params = list(),
  consensus_technique = "Biostrings::consensusString",
  consensus_params = list())

Arguments

test_bin

The test bin to benchmark

classification_technique

The technique to use to search for mislabelled sequences

classification_params

The parameters for the classification technique

alignment_technique

The alignment technique to use

alignment_params

The alignment parameters to use

consensus_technique

The technique to use when generating the consensus sequence

consensus_params

The parameters for the consensus generator


philliplab/MotifBinner documentation built on Sept. 2, 2020, 11:41 a.m.