View source: R/consensus_checker.R
Given a test bin of sequences, benchmark how well the input consensus sequence can be reconstructed
1 2 3 4 5 | score_consensus(test_bin, classification_technique = "infovar_balance",
classification_params = list(threshold = 1),
alignment_technique = "muscle", alignment_params = list(),
consensus_technique = "Biostrings::consensusString",
consensus_params = list())
|
test_bin |
The test bin to benchmark |
classification_technique |
The technique to use to search for mislabelled sequences |
classification_params |
The parameters for the classification technique |
alignment_technique |
The alignment technique to use |
alignment_params |
The alignment parameters to use |
consensus_technique |
The technique to use when generating the consensus sequence |
consensus_params |
The parameters for the consensus generator |
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