process_bin: Given a groups of sequences that were binned together, throw...
In philliplab/MotifBinner: Bin reads by Motif

The output will be a list with a DNAString. The name of the DNAString in the list will be the bin name and will contain information about how many sequences were used to construct the consensus. See construct_consensus.

process_bin(seqs, classification_technique = "infovar_balance",
  classification_params = list(threshold = 1, start_threshold = 0.02,
  max_sequences = 100), alignment_technique = "muscle",
  alignment_params = list(),
  consensus_technique = "Biostrings::consensusString",
  consensus_params = list(), remove_gaps = TRUE, strip_uids = FALSE)

`seqs`	The sequences that were binned together
`classification_technique`	The technique to use to search for mislabelled sequences
`classification_params`	The parameters for the classification technique
`alignment_technique`	The alignment technique to use
`alignment_params`	The alignment parameters to use
`consensus_technique`	The technique to use when generating the consensus sequence
`consensus_params`	The parameters for the consensus generator
`remove_gaps`	If set to TRUE (the default, then gaps will be removed from the consensus sequences)
`strip_uids`	Remove the unique identifiers from the sequence. It is not intelligent. The names will be split on '_' and the first and last pieces will be kept.