pkrog/biodb: biodb, a library and a development framework for connecting to chemical and biological databases
The biodb package provides access to standard remote chemical and biological databases (ChEBI, KEGG, HMDB, ...), as well as to in-house local database files (CSV, SQLite), with easy retrieval of entries, access to web services, search of compounds by mass and/or name, and mass spectra matching for LCMS and MSMS. Its architecture as a development framework facilitates the development of new database connectors for local projects or inside separate published packages.
Getting started
Browse package contents
Package details |
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| Bioconductor views | DataImport Infrastructure KEGG Software |
| Maintainer | |
| License | AGPL-3 |
| Version | 1.6.1 |
| URL | https://github.com/pkrog/biodb |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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