API for plbaldoni/mixNBHMM
Differential Peak Calling via Hidden Markov Model With Mixture of Negative Binomial Distributions
| Global functions | |
|---|---|
| ENCODE | Man page |
| HMM.LLmix2 | Source code |
| HMM.LLmix2_Constr | Source code |
| HMM.LLmix2_diffConstr | Source code |
| HMM.chain | Source code |
| HMM.enumerate | Source code |
| HMM.mean | Source code |
| HMM.mean_Constr | Source code |
| HMM.mean_diffConstr | Source code |
| HMM.mixprob2 | Source code |
| HMM.mixprob2_Constr | Source code |
| HMM.mixprob2_diffConstr | Source code |
| HMM.prob | Source code |
| Mode | Source code |
| Q | Source code |
| Viterbi | Source code |
| ZIHMM.LLmix2_Constr | Source code |
| ZIHMM.mixprob2_Constr | Source code |
| agg | Source code |
| check.prob | Source code |
| classify | Source code |
| controlEM | Man page Source code |
| createOffset | Man page Source code |
| cutoff | Man page Source code |
| deriv.nb | Source code |
| deriv.nb2_Constr | Source code |
| deriv.zinb2_Constr | Source code |
| dzinb | Source code |
| fdrControl | Man page Source code |
| generateHMM | Source code |
| getBIC | Source code |
| glm.nb | Source code |
| glm.nb2 | Source code |
| glm.nb2_Constr | Source code |
| glm.zinb2_Constr | Source code |
| hg19.blacklist.v2 | Man page |
| hmm2_P1 | Source code |
| hmm2_P2 | Source code |
| hmm2_logB | Source code |
| hmm2_logF | Source code |
| hmm_P1 | Source code |
| hmm_P2 | Source code |
| hmm_logB | Source code |
| hmm_logF | Source code |
| inv.par | Source code |
| mixNBHMM | Man page Source code |
| mixNBHMMDataSetFromBam | Man page Source code |
| mixZINBHMM | Man page Source code |
| plotPeaks | Man page Source code |
| simulateHMM | Man page Source code |
| summarizePeaks | Man page Source code |
| vecData | Source code |
