correctedIntensities: Get Corrected Intensity data

In ploverso-pgdx/savR: Parse and analyze Illumina SAV files

Description

Returns a data frame of corrected intensity data.

Usage

correctedIntensities(project)

## S4 method for signature 'savProject'
correctedIntensities(project)

Arguments

project

SAV project

Details

lane:

Lane number

tile:

Tile ID

cycle:

Cycle number

avg_intensity:

Average intensity

avg_cor_[ACGT]:

Average corrected intensity of channel A, C, G, or T

avg_cor_called_[ACGT]:

Average corrected intensity for called clusters in channel A, C, G, or T

num_{none|[ACGT]}:

Number of called bases for no-call, A, C, G, or T

sig_noise:

Signal to noise ratio

Value

sorted data.frame of CI data.

Examples

example(savR)
colnames(correctedIntensities(fc))

ploverso-pgdx/savR documentation built on May 25, 2019, 8:22 a.m.