qualityMetrics: Get Quality Metrics data
In ploverso-pgdx/savR: Parse and analyze Illumina SAV files
Description
Usage
Arguments
Details
Value
Examples
Description
Quality metric by lane, tile and cycle.
Usage
1
2
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4
qualityMetrics(project)
## S4 method for signature 'savProject'
qualityMetrics(project)
Arguments
project
SAV project
Details
lane:Lane number
tile:Tile ID
cycle:Cycle number
Q1-Q50:Number of clusters with quality of indicated column
Value
sorted data.frame of quality data
Examples
1
2
example(savR)
colnames(qualityMetrics(fc))
ploverso-pgdx/savR documentation built on May 25, 2019, 8:22 a.m.
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Description Usage Arguments Details Value Examples
Description
Quality metric by lane, tile and cycle.
Usage
1 2 3 4 | qualityMetrics(project)
## S4 method for signature 'savProject'
qualityMetrics(project)
|
Arguments
project |
SAV project |
Details
lane:Lane number
tile:Tile ID
cycle:Cycle number
Q1-Q50:Number of clusters with quality of indicated column
Value
sorted data.frame of quality data
Examples
1 2 | example(savR)
colnames(qualityMetrics(fc))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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