errorMetrics: Get Error Metrics
In ploverso-pgdx/savR: Parse and analyze Illumina SAV files
Description
Usage
Arguments
Details
Value
Examples
Description
Error metrics for lane, tile, and cycle.
Usage
1
2
3
4
errorMetrics(project)
## S4 method for signature 'savProject'
errorMetrics(project)
Arguments
project
SAV project
Details
lane:Lane number
tile:Tile ID
cycle:Cycle number
errorrate:Error rate
nPerfect:number of perfect reads
n[1-4]Error:Number of reads with 1, 2, 3 and 4 errors
Value
sorted data.frame of Error metrics
Examples
1
2
example(savR)
colnames(extractionMetrics(fc))
ploverso-pgdx/savR documentation built on May 25, 2019, 8:22 a.m.
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Description Usage Arguments Details Value Examples
Description
Error metrics for lane, tile, and cycle.
Usage
1 2 3 4 | errorMetrics(project)
## S4 method for signature 'savProject'
errorMetrics(project)
|
Arguments
project |
SAV project |
Details
lane:Lane number
tile:Tile ID
cycle:Cycle number
errorrate:Error rate
nPerfect:number of perfect reads
n[1-4]Error:Number of reads with 1, 2, 3 and 4 errors
Value
sorted data.frame of Error metrics
Examples
1 2 | example(savR)
colnames(extractionMetrics(fc))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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