qualityHeatmap: Generate a heatmap of qualities

In ploverso-pgdx/savR: Parse and analyze Illumina SAV files

Description

Plots a heatmap of quality vs cycle for a given lane for 1 or more sequence reads. Read qualities include sequence + index.

Usage

qualityHeatmap(project, lane, read, collapse)

## S4 method for signature 'savProject,integer,integer,logical'
qualityHeatmap(project, lane,
  read, collapse = T)

## S4 method for signature 'savProject,numeric,numeric,missing'
qualityHeatmap(project, lane,
  read)

Arguments

project	SAV project
lane	integer lane specification
read	integer vector of sequence reads to include (not including index reads)
collapse	whether or not to collapse index reads into the preceeding read (# reads = directions), default TRUE

ploverso-pgdx/savR documentation built on May 25, 2019, 8:22 a.m.