extractionMetrics: Get Extraction Metrics
In ploverso-pgdx/savR: Parse and analyze Illumina SAV files
Description
Usage
Arguments
Details
Value
Examples
Description
Extraction (intensity and FWHM) metrics for lane, tile, and cycle.
Usage
1
2
3
4
extractionMetrics(project)
## S4 method for signature 'savProject'
extractionMetrics(project)
Arguments
project
SAV project
Details
lane:Lane number
tile:Tile ID
cycle:Cycle number
FWHM_[ACGT]:Full width at half maximum for A, C, G, or T
int_[ACGT]:Intensity of channel A, C, G, or T
datestamp:Time/date stamp
Value
sorted data.frame of Extraction metrics
Examples
1
2
example(savR)
colnames(extractionMetrics(fc))
ploverso-pgdx/savR documentation built on May 25, 2019, 8:22 a.m.
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Description Usage Arguments Details Value Examples
Description
Extraction (intensity and FWHM) metrics for lane, tile, and cycle.
Usage
1 2 3 4 | extractionMetrics(project)
## S4 method for signature 'savProject'
extractionMetrics(project)
|
Arguments
project |
SAV project |
Details
lane:Lane number
tile:Tile ID
cycle:Cycle number
FWHM_[ACGT]:Full width at half maximum for A, C, G, or T
int_[ACGT]:Intensity of channel A, C, G, or T
datestamp:Time/date stamp
Value
sorted data.frame of Extraction metrics
Examples
1 2 | example(savR)
colnames(extractionMetrics(fc))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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