API for pneuvial/c3co
Cancer Cell Clonality using Copy-Number
| Global functions | |
|---|---|
| FACETSwrapper | Man page Source code |
| PSCBSwrapper | Man page Source code |
| Wplot | Man page |
| Wplot,c3coFit-method | Man page |
| Zplot | Man page Source code |
| alignLoci | Man page Source code |
| buildSubclones | Man page Source code |
| c3co | Man page Source code |
| c3coFit-class | Man page |
| checkParams | Source code |
| comma | Source code |
| createZdf | Man page |
| createZdf,c3coFit-method | Man page |
| fitC3co | Man page Source code |
| get.W | Man page Source code |
| get.Zt | Man page Source code |
| getDat | Source code |
| getToyData | Man page Source code |
| heatmap.3 | Man page Source code |
| hpaste | Source code |
| initArchetypes | Source code |
| initNMF | Source code |
| initSVD | Source code |
| initializeZt | Man page Source code |
| loadFACETSdata | Man page Source code |
| loadPSCBSdata | Man page Source code |
| mixSubclones | Man page Source code |
| modelFitStatistics | Man page Source code |
| modelFitStats | Man page |
| modelFitStats,posFused-method | Man page |
| mprint | Source code |
| mprintf | Source code |
| mstr | Source code |
| nbrOfChromosomes | Man page Source code |
| nbrOfChromosomes.C3coSegmentation | Source code |
| nbrOfSamples | Man page Source code |
| nbrOfSamples.C3coSegmentation | Source code |
| nbrOfSegments | Man page Source code |
| nbrOfSegments.C3coSegmentation | Source code |
| posFused-class | Man page |
| positiveFusedLasso | Man page Source code |
| print.C3coSegmentation | Source code |
| pvePlot | Man page Source code |
| pvePlot2 | Man page Source code |
| rSpMatrix | Man page Source code |
| rSparseWeightMatrix | Man page Source code |
| sampleNames | Man page Source code |
| sampleNames.C3coSegmentation | Source code |
| segmentData | Man page Source code |
| stop_if_not | Source code |
| trackNames | Man page Source code |
| trackNames.C3coSegmentation | Source code |
| trim.heatmap | Source code |
