Files in priesgo/TCGAome
MultiOmics (just RNAseq and RPPA...) Data Analyzer on TCGA data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/biomart.r
R/config.R
R/functional_analysis.R
R/gene_annotations.R
R/gene_list_enrichment.R
R/go_inspector.r
R/multivariate_analysis.R
R/pipeline.r
R/plots.r
R/preprocessing.r
R/tcga_download.r
R/terms_clustering.R
README.md
TCGAome.Rproj
docs/TCGA MultiOmics Data Analysis.pdf
docs/enrichment_analysis.Rmd
docs/enrichment_analysis.pdf
docs/figures/enrichment_class_model.png
docs/performance.Rmd
docs/performance.html
docs/performance.pdf
docs/presentation.Rpres
docs/presentation.html
docs/presentation.md
docs/presentation2.Rmd
docs/presentation2.html
inst/cancer_related_biological_processes.txt
inst/ensembl_attrib.txt
inst/tsg_database_sig_exp.txt
inst/vogelstein_oncogenes_and_tsg.processed.txt
inst/vogelstein_oncogenes_and_tsg.txt
man/GeneAnnotations-class.Rd
man/GeneAnnotations.Rd
man/GeneListEnrichment-class.Rd
man/GeneListEnrichment.Rd
man/TermsClustering-class.Rd
man/TermsClustering.Rd
man/get_TCGAome_tumor_types.Rd
man/get_bc_similarity.Rd
man/get_binary_similarity.Rd
man/get_cosine_similarity.Rd
man/get_enrichment.Rd
man/get_functional_similarity.Rd
man/get_significant_results.Rd
man/get_term_distance_matrix.Rd
man/get_term_freq.Rd
man/get_terms_clustering.Rd
man/get_ui_similarity.Rd
man/load_goa.Rd
man/load_hpo.Rd
man/load_kegg.Rd
man/load_omim.Rd
man/plot.Rd
man/plot_explained_variance.Rd
man/plot_mds.Rd
man/plot_scatter.Rd
man/plot_silhouette_analysis.Rd
man/plot_violin.Rd
man/run_TCGAome.Rd
tests/testthat.R
tests/testthat/TCGAome.log
tests/testthat/helper_functions.R
tests/testthat/selected_variables.txt
tests/testthat/test_biomart.R
tests/testthat/test_config.R
tests/testthat/test_gene_annotations.R
tests/testthat/test_gene_list_enrichment.R
tests/testthat/test_go_inspector.R
tests/testthat/test_goa_enrichment.R
tests/testthat/test_pipeline.R
tests/testthat/test_terms_clustering.R
