Files in priesgo/TCGAome
MultiOmics (just RNAseq and RPPA...) Data Analyzer on TCGA data

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/biomart.r R/config.R R/functional_analysis.R R/gene_annotations.R R/gene_list_enrichment.R R/go_inspector.r R/multivariate_analysis.R R/pipeline.r R/plots.r R/preprocessing.r R/tcga_download.r R/terms_clustering.R README.md
TCGAome.Rproj
docs/TCGA MultiOmics Data Analysis.pdf docs/enrichment_analysis.Rmd docs/enrichment_analysis.pdf
docs/figures/enrichment_class_model.png
docs/performance.Rmd
docs/performance.html
docs/performance.pdf
docs/presentation.Rpres
docs/presentation.html
docs/presentation.md docs/presentation2.Rmd
docs/presentation2.html
inst/cancer_related_biological_processes.txt
inst/ensembl_attrib.txt
inst/tsg_database_sig_exp.txt
inst/vogelstein_oncogenes_and_tsg.processed.txt
inst/vogelstein_oncogenes_and_tsg.txt
man/GeneAnnotations-class.Rd man/GeneAnnotations.Rd man/GeneListEnrichment-class.Rd man/GeneListEnrichment.Rd man/TermsClustering-class.Rd man/TermsClustering.Rd man/get_TCGAome_tumor_types.Rd man/get_bc_similarity.Rd man/get_binary_similarity.Rd man/get_cosine_similarity.Rd man/get_enrichment.Rd man/get_functional_similarity.Rd man/get_significant_results.Rd man/get_term_distance_matrix.Rd man/get_term_freq.Rd man/get_terms_clustering.Rd man/get_ui_similarity.Rd man/load_goa.Rd man/load_hpo.Rd man/load_kegg.Rd man/load_omim.Rd man/plot.Rd man/plot_explained_variance.Rd man/plot_mds.Rd man/plot_scatter.Rd man/plot_silhouette_analysis.Rd man/plot_violin.Rd man/run_TCGAome.Rd tests/testthat.R
tests/testthat/TCGAome.log
tests/testthat/helper_functions.R
tests/testthat/selected_variables.txt
tests/testthat/test_biomart.R tests/testthat/test_config.R tests/testthat/test_gene_annotations.R tests/testthat/test_gene_list_enrichment.R tests/testthat/test_go_inspector.R tests/testthat/test_goa_enrichment.R tests/testthat/test_pipeline.R tests/testthat/test_terms_clustering.R
priesgo/TCGAome documentation built on May 24, 2017, 11:20 a.m.