load_goa: Reads Gene Ontology Annotations (GOA) for Human genes and for...

In priesgo/TCGAome: MultiOmics (just RNAseq and RPPA...) Data Analyzer on TCGA data

Description

Reads Gene Ontology Annotations (GOA) for Human genes and for all Uniprot. No electronically inferred annotations (IEA)

Usage

load_goa(search_universe = "human", ontology = "BP",
  goa_uniprot_annotations_url = "http://geneontology.org/gene-associations/gene_association.goa_uniprot_noiea.gz")

Arguments

search_universe	Two possible values "human" or "uniprot". The first provides associations to GO of human genes, while the second considers all genes registered in Uniprot. [default: "human"]
ontology	The ontology within Gene Ontology: "BP", "CC" or "MF". [default: "BP"]
goa_uniprot_annotations_url	The URL to Uniprot GOA. [default: "http://geneontology.org/gene-associations/gene_association.goa_uniprot_noiea.gz"]

Examples

goa = load_goa()

priesgo/TCGAome documentation built on May 25, 2019, 11:26 a.m.