get_terms_clustering: get_terms_clustering()

Description Usage Arguments Value Examples

Description

Function that creates a new object of class TermsClustering. The clustering is performed on a significant set of enrichment results that is defined by the parameters passed to this function.

Usage

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get_terms_clustering(x, gene_annotations, distance_measure,
  significance_threshold, adj_method, max_clusters)

Arguments

x

The GeneListEnrichment class on which the method will run.

gene_annotations

The GeneAnnotations on which the enrichment was computed.

distance_measure

The similarity distance metric employed.

significance_threshold

The significance enrichment threshold

adj_method

The multiple test correction method (any of those supported by p.adjust())

Value

An object of class TermsClustering

Examples

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TODO

priesgo/TCGAome documentation built on May 25, 2019, 11:26 a.m.