Man pages for priesgo/TCGAome
MultiOmics (just RNAseq and RPPA...) Data Analyzer on TCGA data
| GeneAnnotations | GeneAnnotations constructor |
| GeneAnnotations-class | GeneAnnotations class |
| GeneListEnrichment | GeneListEnrichment constructor |
| GeneListEnrichment-class | GeneListEnrichment class |
| get_bc_similarity | get_bc_similarity() |
| get_binary_similarity | get_binary_similarity() |
| get_cosine_similarity | get_cosine_similarity() |
| get_enrichment | get_enrichment() |
| get_functional_similarity | get_functional_similarity() |
| get_significant_results | get_significant_results() |
| get_TCGAome_tumor_types | Returns the supported tumor types. |
| get_term_distance_matrix | get_term_distance_matrix() |
| get_term_freq | get_term_freq() |
| get_terms_clustering | get_terms_clustering() |
| get_ui_similarity | get_ui_similarity() |
| load_goa | Reads Gene Ontology Annotations (GOA) for Human genes and for... |
| load_hpo | Reads Human Phenotype Ontology (HPO) annotations. |
| load_kegg | Reads KEGG pathways for Human genes and for all Uniprot. No... |
| load_omim | Reads OMIM diseases for Human genes. |
| plot | plot() |
| plot_explained_variance | plot_explained_variance() |
| plot_mds | plot_mds() |
| plot_scatter | plot_scatter() |
| plot_silhouette_analysis | plot_silhouette_analysis() |
| plot_violin | plot_violin() |
| run_TCGAome | Runs the TCGAome analysis pipeline on the given tumor types. |
| TermsClustering | TermsClustering constructor |
| TermsClustering-class | TermsClustering class |
