affy.omni: Mapping of Omni 2.5M probesets to Affy SNP6.0
In quevedor2/CCLid: Compares Cancer Cell Line Genotypes Against Pharmacogenomic Datasets
Description
Mapping of Omni 2.5M probesets to Affy SNP6.0
Usage
1
Format
An annotated data.frame structure
- mergeid
Unique snp identifier
- Probe_Set_ID
Affy6 Probeset ID
- dbSNP_RS_ID
dbSNP RS ID
- Chromosome
Affy6 Chr
- Physical_Position
Affy6 genomic position
- Strand
Affy6 Strand
- Allele_A
Affy6 Allele A
- Allele_B
Affy6 Allele B
- Name
Omni2.5 ID
- SNP
Omni2.5 SNPs in X/Y format
- Chr
Omni2.5 Chromosome
- MapInfo
Omni2.5 hg19 genomic position
- RefStrand
Omni2.5 Strand
- SNP_A
Omni2.5 Allele A for RefStrand
- SNP_B
Omni2.5 Allele B for RefStrand
- scSNP_A
Omni2.5 strand-corrected Allele A
- scSNP_B
Omni2.5 strand-corrected Allele B
- flip
Value to flip Omni2.5 alleles if strands didnt match
...
quevedor2/CCLid documentation built on July 15, 2020, 4:05 a.m.
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Description
Mapping of Omni 2.5M probesets to Affy SNP6.0
Usage
1 |
Format
An annotated data.frame structure
- mergeid
Unique snp identifier
- Probe_Set_ID
Affy6 Probeset ID
- dbSNP_RS_ID
dbSNP RS ID
- Chromosome
Affy6 Chr
- Physical_Position
Affy6 genomic position
- Strand
Affy6 Strand
- Allele_A
Affy6 Allele A
- Allele_B
Affy6 Allele B
- Name
Omni2.5 ID
- SNP
Omni2.5 SNPs in X/Y format
- Chr
Omni2.5 Chromosome
- MapInfo
Omni2.5 hg19 genomic position
- RefStrand
Omni2.5 Strand
- SNP_A
Omni2.5 Allele A for RefStrand
- SNP_B
Omni2.5 Allele B for RefStrand
- scSNP_A
Omni2.5 strand-corrected Allele A
- scSNP_B
Omni2.5 strand-corrected Allele B
- flip
Value to flip Omni2.5 alleles if strands didnt match
...
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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