bafDrift: bafDrift

In quevedor2/CCLid: Compares Cancer Cell Line Genotypes Against Pharmacogenomic Datasets

Description

Calcualtes the amount of genetic drift in a sample

Usage

bafDrift(
  sample.mat,
  debug = FALSE,
  centering = "none",
  norm.baf = TRUE,
  hom.filt.val = 0.07,
  snp6.dat,
  ...
)

Arguments

sample.mat	Input sample matrix
debug	should be set to FALSE and only changed when debugging
centering	Centering the metric on median, none, or mean
norm.baf	Boolean to normalize BAF (Default =TRUE)
hom.filt.val	Homozygous filtering threshold (Default = 0.07)
snp6.dat	SNP6 probeset genomic position, accessible from CCLid::ccl_table
...	Extra param

quevedor2/CCLid documentation built on July 15, 2020, 4:05 a.m.